Do a search for pressure treated pontoon , you will find that most are new boats have either Pressure treated 3/4 ply , or aluminum floors.
Yes the pressure treated will have some shrinkage when dry but will not be that much, all wood expands and contracts due to moisture, your going to be in and around water .. wood is going to get wet . Check with East Brainerd Lumber, they may have some that is fairly dry, they cover all their wood, I have bought pressure treated lumber there that was 80% dry.. Lowe's , and home depot stores theirs outside open in the rain, only brought in to put on the shelf.
Basically on a pontoon you have 3 choices treated or aluminum corrugated deck, you could try the Advantech mention above Ive had a piece sitting in the rain about 4x4 for several years still looks good, prob would be fine. for a pontoon. But I personally. would go with what the builders use, and that is Pressure treated or aluminum corrugated decking.
But Dont know where you could buy the Corrugated Alum decking, and I know the cost would be much higher than the Pressure treated Plywood.
Dont sweat it so much relax.