I'll post what I believe to be the best practice. A cranking battery needs to be just that, a marine cranking battery is constructed to provide the sudden high amps needed to start an outboard. Trolling motors on the other hand need deep cycle batteries. I undestand that a cranking battery is not constructed to be discharged over a long period of time like a deep cycle battery is. A compromise is to use the dual purpose batteries which are a hybrid construction for cranking or deep discharge. What I'm saying applies to wet cell or AGM, I have no experience with Lithium. My practice the last several years is to use a dual purpose as big as I can afford AGM for my cranking battery since it also powers electronics. I use wet cell deep discharge for the trolling motor. I second the post that you shouldn't mix trolling motor batteries. If you have a strong battery and a weak battery on a 24v or 36v system then the weak battery will pull the other batteries down.